Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils.
Identifieur interne : 000280 ( Main/Exploration ); précédent : 000279; suivant : 000281Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils.
Auteurs : Antoine Pierart [Espagne] ; Arthur Quymanh Maes [France] ; Camille Dumat [France] ; Nathalie Sejalon-Delmas [France]Source :
- Environmental science and pollution research international [ 1614-7499 ] ; 2019.
Descripteurs français
- KwdFr :
- Agriculture (méthodes), Compostage (MeSH), Microbiologie du sol (MeSH), Mycobiome (génétique), Mycobiome (physiologie), Mycorhizes (MeSH), Métaux (pharmacocinétique), Oignons (croissance et développement), Oignons (microbiologie), Polluants du sol (pharmacocinétique), Racines de plante (microbiologie), Sol (composition chimique), Symbiose (MeSH).
- MESH :
- composition chimique : Sol.
- croissance et développement : Oignons.
- génétique : Mycobiome.
- microbiologie : Oignons, Racines de plante.
- méthodes : Agriculture.
- pharmacocinétique : Métaux, Polluants du sol.
- physiologie : Mycobiome.
- Compostage, Microbiologie du sol, Mycorhizes, Symbiose.
English descriptors
- KwdEn :
- Agriculture (methods), Composting (MeSH), Metals (pharmacokinetics), Mycobiome (genetics), Mycobiome (physiology), Mycorrhizae (MeSH), Onions (growth & development), Onions (microbiology), Plant Roots (microbiology), Soil (chemistry), Soil Microbiology (MeSH), Soil Pollutants (pharmacokinetics), Symbiosis (MeSH).
- MESH :
- chemical , chemistry : Soil.
- chemical , pharmacokinetics : Metals, Soil Pollutants.
- genetics : Mycobiome.
- growth & development : Onions.
- methods : Agriculture.
- microbiology : Onions, Plant Roots.
- physiology : Mycobiome.
- Composting, Mycorrhizae, Soil Microbiology, Symbiosis.
Abstract
In the context of urban agriculture, where soils are frequently contaminated with metal(loid)s (TM), we studied the influence of vermicompost amendments on symbiotic fungal communities associated with plants grown in two metal-rich soils. Leek (Allium porrum L.) plants were grown with or without vermicompost in two metal-rich soils characterized by either geogenic or anthropogenic TM sources, to assess the influence of pollutant origin on soil-plant transfer. Fungal communities associated with the leek roots were identified by high throughput Illumina MiSeq and TM contents were measured using mass spectrometry. Vermicompost addition led to a dramatic change in the fungal community with a loss of diversity in the two tested soils. This effect could partially explain the changes in metal transfer at the soil-AMF-plant interface. Our results suggest being careful while using composts when growing edibles in contaminated soils. More generally, this study highlights the need for further research in the field of fungal communities to refine practical recommendations to gardeners. Graphical abstract.
DOI: 10.1007/s11356-018-2803-7
PubMed: 30109687
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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(microbiologie)</term><term>Polluants du sol (pharmacocinétique)</term><term>Racines de plante (microbiologie)</term><term>Sol (composition chimique)</term><term>Symbiose (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacokinetics" xml:lang="en"><term>Metals</term><term>Soil Pollutants</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Sol</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Oignons</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycobiome</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Onions</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Mycobiome</term></keywords><keywords scheme="MESH" qualifier="methods" 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sol</term><term>Mycorhizes</term><term>Symbiose</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In the context of urban agriculture, where soils are frequently contaminated with metal(loid)s (TM), we studied the influence of vermicompost amendments on symbiotic fungal communities associated with plants grown in two metal-rich soils. Leek (Allium porrum L.) plants were grown with or without vermicompost in two metal-rich soils characterized by either geogenic or anthropogenic TM sources, to assess the influence of pollutant origin on soil-plant transfer. Fungal communities associated with the leek roots were identified by high throughput Illumina MiSeq and TM contents were measured using mass spectrometry. Vermicompost addition led to a dramatic change in the fungal community with a loss of diversity in the two tested soils. This effect could partially explain the changes in metal transfer at the soil-AMF-plant interface. Our results suggest being careful while using composts when growing edibles in contaminated soils. More generally, this study highlights the need for further research in the field of fungal communities to refine practical recommendations to gardeners. Graphical abstract.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30109687</PMID><DateCompleted><Year>2019</Year><Month>09</Month><Day>13</Day></DateCompleted><DateRevised><Year>2020</Year><Month>02</Month><Day>25</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1614-7499</ISSN><JournalIssue CitedMedium="Internet"><Volume>26</Volume><Issue>20</Issue><PubDate><Year>2019</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Environmental science and pollution research international</Title><ISOAbbreviation>Environ Sci Pollut Res Int</ISOAbbreviation></Journal><ArticleTitle>Vermicompost addition influences symbiotic fungi communities associated with leek cultivated in metal-rich soils.</ArticleTitle><Pagination><MedlinePgn>20040-20051</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11356-018-2803-7</ELocationID><Abstract><AbstractText>In the context of urban agriculture, where soils are frequently contaminated with metal(loid)s (TM), we studied the influence of vermicompost amendments on symbiotic fungal communities associated with plants grown in two metal-rich soils. Leek (Allium porrum L.) plants were grown with or without vermicompost in two metal-rich soils characterized by either geogenic or anthropogenic TM sources, to assess the influence of pollutant origin on soil-plant transfer. Fungal communities associated with the leek roots were identified by high throughput Illumina MiSeq and TM contents were measured using mass spectrometry. Vermicompost addition led to a dramatic change in the fungal community with a loss of diversity in the two tested soils. This effect could partially explain the changes in metal transfer at the soil-AMF-plant interface. Our results suggest being careful while using composts when growing edibles in contaminated soils. More generally, this study highlights the need for further research in the field of fungal communities to refine practical recommendations to gardeners. Graphical abstract.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pierart</LastName><ForeName>Antoine</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9837-8121</Identifier><AffiliationInfo><Affiliation>Ecotoxicology Lab, Fac. Environmental Science and Biochemistry, University of Castilla-La Mancha, Toledo, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maes</LastName><ForeName>Arthur QuyManh</ForeName><Initials>AQ</Initials><AffiliationInfo><Affiliation>LRSV, Laboratoire de recherche en sciences végétales, Université de Toulouse, UPS, CNRS, 24 chemin de Borderouge, 31326, Castanet-Tolosan, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dumat</LastName><ForeName>Camille</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>CERTOP, UMR 5044, CNRS-UT2J-UPS, Maison de la Recherche, Université Toulouse, Toulouse Cedex 9, France.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>INP-ENSAT, Université de Toulouse, Toulouse, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sejalon-Delmas</LastName><ForeName>Nathalie</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>LRSV, Laboratoire de recherche en sciences végétales, Université de Toulouse, UPS, CNRS, 24 chemin de Borderouge, 31326, Castanet-Tolosan, France. nathalie.delmas@lrsv.ups-tlse.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>ANR-12-0011-VBDU</GrantID><Agency>Agence Nationale de la Recherche</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>08</Month><Day>14</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Environ Sci Pollut Res Int</MedlineTA><NlmUniqueID>9441769</NlmUniqueID><ISSNLinking>0944-1344</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D008670">Metals</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance 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MajorTopicYN="N">Mycorrhizae</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019697" MajorTopicYN="N">Onions</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012987" MajorTopicYN="N">Soil</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="N">Soil Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012989" MajorTopicYN="N">Soil Pollutants</DescriptorName><QualifierName UI="Q000493" MajorTopicYN="Y">pharmacokinetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Arbuscular mycorrhizal fungi</Keyword><Keyword MajorTopicYN="N">Fungal community</Keyword><Keyword MajorTopicYN="N">Metal(loid)s</Keyword><Keyword MajorTopicYN="N">Soil-plant transfer</Keyword><Keyword MajorTopicYN="N">Urban agriculture</Keyword><Keyword MajorTopicYN="N">Vermicompost</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>01</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>07</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>8</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>9</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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IdType="pubmed">9835596</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Espagne</li><li>France</li></country><region><li>Midi-Pyrénées</li><li>Occitanie (région administrative)</li></region><settlement><li>Castanet-Tolosan</li><li>Toulouse</li></settlement></list><tree><country name="Espagne"><noRegion><name sortKey="Pierart, Antoine" sort="Pierart, Antoine" uniqKey="Pierart A" first="Antoine" last="Pierart">Antoine Pierart</name></noRegion></country><country name="France"><region name="Occitanie (région administrative)"><name sortKey="Maes, Arthur Quymanh" sort="Maes, Arthur Quymanh" uniqKey="Maes A" first="Arthur Quymanh" last="Maes">Arthur Quymanh Maes</name></region><name sortKey="Dumat, Camille" sort="Dumat, Camille" uniqKey="Dumat C" first="Camille" last="Dumat">Camille Dumat</name><name sortKey="Dumat, Camille" sort="Dumat, Camille" uniqKey="Dumat C" first="Camille" last="Dumat">Camille Dumat</name><name sortKey="Sejalon Delmas, Nathalie" sort="Sejalon Delmas, Nathalie" uniqKey="Sejalon Delmas N" first="Nathalie" last="Sejalon-Delmas">Nathalie Sejalon-Delmas</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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